I was there in February. Did not find it the easiest of cities to get around even though I stayed in City centre. Of the top of my head...
* Biking across the Golden Gate bridge & ferry back is recommended but I did not do it myself.
* Alcatraz is worth doing but make sure you book well in advance on the web. I would think June could be very busy.
* The Pier 39 is rubbish tourist trap.
* If you getting cable car better off not starting at Union Square as big queues. Just go up the hill a few stops as they always keep space.
* SOMA (modern art museum) surprisingly good if looking to kill a couple of hours.
My impression was that run out of things to do after a few days.
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