I thought part of the new UEFA Cup criteria was that losing cup finalists no longer qualify, even if they lose to the league champions.
From Wikipedia (http://en.wikipedia.org/wiki/UEFA_Cup)
Cup winners who have already qualified for European competition via league placing will no longer hand their UEFA Europa League slot to the losing finalist. Their place in the competition will instead devolve onto the highest-placed team in the league not yet in European competition.
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